JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR2_chr17_73160010_73181633	0/0	t0072	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0073	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0074	6579	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0075	6546	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0076	6579	1	0	0	0	1	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0077	6578	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0078	6576	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0079	6580	1	0	0	0	1	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0080	6578	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0081	6578	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0082	6579	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0083	6580	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0084	6581	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0085	6578	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0086	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0087	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0088	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0089	6581	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0090	6581	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0091	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0092	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0093	6579	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0094	6578	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0095	6576	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0096	6576	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0097	6575	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0098	6576	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0099	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0100	6576	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0101	6576	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0102	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0103	6575	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0104	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0105	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0106	6576	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0107	6576	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0108	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0109	6575	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0110	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0111	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0112	6577	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0113	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0114	6575	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0115	6573	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0116	6573	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0117	6569	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0118	6573	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0119	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0120	6573	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0121	6571	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633