JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR2_chr17_73160010_73181633	0/0	t0122	6570	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0123	6568	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0124	6573	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0125	6572	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0126	6573	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0127	6570	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0128	6570	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0129	6568	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0130	6565	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0131	6568	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0132	6565	1	0	0	0	1	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0133	6559	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0134	6557	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0135	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0136	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0137	6581	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0138	6577	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0139	6572	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0140	6572	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0141	6573	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0142	6574	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0143	6571	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0144	6568	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0145	6568	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0146	6567	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0147	6569	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0148	6566	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0149	6572	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0150	6604	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0151	6603	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0152	6600	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0153	6600	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0154	6599	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0155	6598	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0156	6597	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0157	6597	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0158	6595	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0159	6593	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0160	6589	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0161	6587	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0162	6582	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0163	6582	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0164	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0165	6579	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0166	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0167	6579	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0168	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0169	6579	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0170	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0171	6579	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633