JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR2_chr17_73160010_73181633	0/0	t0172	6577	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0173	6580	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0174	6577	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0175	6576	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0176	6576	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0177	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0178	6576	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0179	6575	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0180	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0181	6576	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0182	6574	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0183	6577	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0184	6575	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0185	6576	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0186	6574	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0187	6571	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0188	6572	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0189	6572	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0190	6571	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0191	6570	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0192	6568	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0193	6561	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0194	6580	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0195	6570	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0196	6576	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0197	6579	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0198	6578	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0199	6578	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0200	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0201	6575	1	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0202	6577	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0203	6571	1	0	0	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR3_chr22_37199237_37217477	0/0	t0001	3000	121	29	22	43	6	21	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0002	3000	108	1	20	78	1	8	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0003	2998	87	10	18	48	5	6	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0004	3000	13	12	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0005	3000	12	12	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	1/0	t0006	3000	10	1	2	0	1	5	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0007	3000	8	0	6	0	1	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/1	t0008	2998	7	0	4	0	1	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0009	3000	6	5	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0010	3000	6	5	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0011	3000	5	5	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0012	3000	4	2	1	0	1	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0013	3000	3	2	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0014	3000	2	2	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0015	3000	2	0	0	0	0	2	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0016	3000	2	2	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0017	2998	2	0	0	0	2	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0018	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477