JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR3_chr22_37199237_37217477	0/0	t0019	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0020	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0021	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0022	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0023	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0024	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0025	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0026	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0027	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0028	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0029	3000	1	0	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0030	3000	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0031	3000	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0032	2998	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0033	2998	1	0	0	0	0	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0034	2998	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	t0035	2998	1	0	0	0	0	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR4_chr20_23030312_23044237	1/1	t0001	2760	142	27	31	64	8	10	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0002	2760	110	20	13	49	7	21	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0003	2755	89	9	13	59	1	7	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0004	2760	26	5	4	14	0	3	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0005	2760	19	11	2	6	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0006	2760	8	6	2	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0007	2760	6	0	0	6	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0008	2760	5	5	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0009	2760	4	1	3	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0010	2760	4	0	0	4	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0011	2760	3	0	3	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0012	2760	2	2	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0013	2760	2	2	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0014	2760	2	0	0	2	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0015	2760	2	2	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0016	2760	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0017	2760	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0018	2755	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0019	2755	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0020	2760	1	0	0	0	0	1	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0021	2760	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0022	2760	1	0	1	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0023	2760	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0024	2760	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0025	2760	1	0	1	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0026	2760	1	0	1	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0027	2760	1	0	0	0	1	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0028	2760	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	t0029	2760	1	0	0	0	1	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR5_chr16_1067747_1086454	0/1	t0001	1595	139	19	20	80	6	13	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	1/0	t0002	1595	97	23	26	26	5	16	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0003	1595	25	18	3	1	0	3	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0004	1595	20	0	0	20	0	0	copy fasta	SSTR5	chr16	1067747	1086454