JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR5_chr16_1067747_1086454	0/0	t0005	1595	17	1	11	2	3	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0006	1595	10	8	2	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0007	1595	8	5	0	0	0	3	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0008	1595	5	0	0	5	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0009	1595	4	4	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0010	1595	3	0	3	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0011	1595	3	0	2	0	1	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0012	1595	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0013	1595	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0014	1595	2	0	0	0	2	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0015	1595	2	0	0	0	0	2	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0016	1595	1	0	0	0	1	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0017	1595	1	1	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0018	1595	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0019	1595	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0020	1595	1	1	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0021	1595	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0022	1595	1	0	0	0	0	1	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0023	1595	1	1	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0024	1595	1	1	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0025	1595	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	t0026	1595	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SST_chr3_187663912_187675394	1/1	t0001	257	366	81	68	162	13	40	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	t0002	257	53	15	14	16	4	4	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	t0003	257	1	0	0	0	1	0	copy fasta	SST	chr3	187663912	187675394
SSU72L1_chr11_4333245_4344345	1/0	t0001	517	136	25	19	80	3	8	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0002	517	71	9	10	40	2	10	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0003	517	52	0	10	29	3	10	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0004	517	47	3	15	19	4	6	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0005	517	11	1	5	0	0	5	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0006	517	6	0	0	5	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0007	517	5	2	1	1	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0008	517	3	0	0	3	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0009	517	2	0	0	1	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0010	517	1	0	1	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0011	517	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0012	517	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0013	517	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0014	517	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0015	517	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0016	517	1	0	1	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	t0017	517	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L2_chr11_4236641_4247706	0/0	t0001	482	102	8	15	74	0	5	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/1	t0002	482	96	4	31	38	7	15	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0003	482	63	16	16	21	1	9	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0004	482	51	8	4	30	3	6	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	1/0	t0005	482	18	15	0	2	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0006	482	9	9	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0007	482	8	7	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0008	482	2	0	1	0	1	0	copy fasta	SSU72L2	chr11	4236641	4247706