JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSU72L2_chr11_4236641_4247706	0/0	t0009	482	2	1	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0010	482	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0011	482	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0012	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0013	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0014	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0015	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0016	482	1	0	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0017	482	1	0	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0018	482	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0019	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0020	482	1	0	0	1	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0021	482	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	t0022	482	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L3_chr11_4324790_4335864	0/1	t0001	491	138	9	33	77	5	13	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0002	491	114	12	29	55	6	12	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0003	491	41	0	6	24	1	10	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	1/0	t0004	491	15	13	1	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0005	491	11	0	0	11	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0006	491	5	1	0	3	0	1	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0007	491	3	3	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0008	491	2	0	0	0	0	2	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0009	491	2	2	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0010	491	1	0	1	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0011	491	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0012	491	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0013	491	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0014	491	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0015	491	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0016	491	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0017	491	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	t0018	491	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L4_chr11_4282084_4293185	0/0	t0000	0	1	0	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0001	518	88	11	17	52	1	7	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0002	518	58	27	11	13	1	6	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0003	518	45	5	5	22	3	10	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0004	518	38	0	17	11	4	6	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0005	518	28	5	7	14	2	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0006	518	15	15	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0007	518	13	0	7	0	1	5	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0008	518	11	8	0	3	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0009	518	3	0	0	3	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0010	518	2	0	0	2	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0011	518	2	2	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0012	518	2	2	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0013	518	2	2	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0014	518	2	2	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0015	518	2	1	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0016	518	2	0	0	2	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0017	518	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185