Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMAL2_chr12_27327836_27430286	0/0	t0011	4981	3	3	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0012	4991	3	3	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0013	4992	3	0	1	2	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0014	4988	3	2	1	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0015	4991	2	0	2	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0016	4992	2	0	1	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0017	4991	2	1	1	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0018	4992	2	0	0	2	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0019	4991	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0020	4991	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0021	4988	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0022	4988	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0023	4988	2	0	0	2	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0024	4988	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0025	4992	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	1/0	t0026	4992	1	0	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0027	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0028	4988	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0029	4988	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0030	4988	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0031	4991	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0032	4991	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0033	4988	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0034	4991	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0035	4991	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0036	4991	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0037	4991	1	0	0	1	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0038	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0039	4992	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0040	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0041	4991	1	0	1	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0042	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0043	4988	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0044	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0045	4992	1	1	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMERB1_chr16_15429588_15593259	0/1	t0001	1496	130	24	30	54	6	15	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0002	1497	49	4	22	14	4	5	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0003	1497	33	16	4	6	0	7	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0004	1497	13	0	0	13	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0005	1495	11	11	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0006	1495	10	9	1	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0007	1498	8	1	2	4	1	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0008	1495	6	1	0	3	1	1	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0009	1494	5	4	1	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0010	1495	5	4	1	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0011	1495	5	0	1	2	0	2	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0012	1496	3	2	0	0	1	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0013	1496	2	2	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0014	1496	2	0	0	2	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0015	1496	1	1	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259