JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSU72L4_chr11_4282084_4293185	0/0	t0018	518	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0019	518	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	t0020	518	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L5_chr11_4228217_4239287	0/0	t0001	487	100	11	15	67	1	6	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/1	t0002	487	93	7	29	35	7	14	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0003	487	45	16	5	17	0	7	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0004	487	43	1	5	31	2	4	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	1/0	t0005	487	18	13	0	4	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0006	487	13	1	11	0	0	1	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0007	487	9	9	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0008	487	8	8	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0009	487	4	4	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0010	487	2	2	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0011	487	2	2	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0012	487	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0013	487	1	0	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0014	487	1	0	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0015	487	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0016	487	1	0	0	0	0	1	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0017	487	1	0	0	0	0	1	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0018	487	1	0	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0019	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0020	487	1	0	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0021	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0022	487	1	0	0	0	1	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0023	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0024	487	1	0	0	0	1	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0025	487	1	0	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0026	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0027	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	t0028	487	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L6_chr7_124471317_124482664	0/0	t0001	763	240	34	27	150	3	26	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	1/1	t0002	764	209	57	48	77	11	14	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0003	764	6	4	2	0	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0004	765	4	0	0	3	0	1	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0005	764	2	0	1	1	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0006	763	2	1	1	0	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0007	763	1	0	0	1	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0008	763	1	0	0	0	0	1	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	t0009	763	1	0	1	0	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72_chr1_1536673_1579863	0/0	t0001	698	200	54	35	82	6	23	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	1/1	t0002	700	82	7	22	27	7	17	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0003	696	77	7	12	49	0	9	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0004	700	21	12	7	0	1	1	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0005	698	2	2	0	0	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0006	698	1	0	0	1	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0007	700	1	1	0	0	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0008	700	1	1	0	0	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	t0009	698	1	0	0	1	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSUH2_chr3_8614386_8649798	1/1	t0001	523	422	70	77	206	18	49	copy fasta	SSUH2	chr3	8614386	8649798