JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSX5_chrX_48181220_48201795	0/0	t0042	703	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0043	725	1	0	0	0	0	1	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0044	727	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0045	723	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	t0046	727	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX7_chrX_52639061_52659900	0/1	t0001	776	294	69	59	124	11	30	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0002	778	2	2	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0003	774	2	2	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0004	776	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0005	776	1	0	0	0	1	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	1/0	t0006	774	1	0	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0007	779	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0008	772	1	1	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0009	776	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	t0010	776	1	0	0	0	1	0	copy fasta	SSX7	chrX	52639061	52659900
ST13_chr22_40819535_40861639	1/1	t0001	2103	278	75	47	99	15	40	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0002	2103	30	0	0	30	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0003	2103	12	0	0	12	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0004	2103	6	4	2	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0005	2103	4	3	1	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0006	2103	2	2	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0007	2103	2	1	1	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0008	2103	2	2	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0009	2103	2	1	1	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0010	2103	2	0	0	2	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0011	2103	1	0	0	0	1	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0012	2103	1	1	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0013	2103	1	1	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	t0014	2103	1	0	0	1	0	0	copy fasta	ST13	chr22	40819535	40861639
ST14_chr11_130154782_130215362	1/1	t0001	738	141	45	29	52	4	9	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0002	738	123	24	25	47	8	19	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0003	738	12	10	2	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0004	738	10	9	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0005	738	3	3	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0006	738	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0007	738	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	t0008	738	1	0	0	1	0	0	copy fasta	ST14	chr11	130154782	130215362
ST18_chr8_52105838_52414756	1/0	t0001	3159	37	21	7	4	0	4	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/1	t0002	3155	21	6	4	10	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0003	3155	12	12	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0004	3158	8	7	0	1	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0005	3155	5	4	1	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0006	3157	3	0	0	3	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0007	3155	3	3	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0008	3155	2	2	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0009	3158	2	2	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0010	3155	2	2	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0011	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0012	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0013	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756