JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST18_chr8_52105838_52414756	0/0	t0014	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0015	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0016	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0017	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0018	3159	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	t0019	3155	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST3GAL1_chr8_133449848_133576887	0/0	t0001	5693	76	7	24	28	4	13	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0002	5691	58	1	3	47	0	7	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0003	5693	45	12	7	14	3	9	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0004	5693	19	7	8	3	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0005	5691	11	0	5	2	4	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0006	5693	6	6	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/1	t0007	5693	5	0	1	0	2	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0008	5693	5	5	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0009	5691	5	0	0	5	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0010	5693	4	4	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0011	5693	3	3	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0012	5693	3	0	0	0	2	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0013	5690	3	2	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0014	5693	3	2	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0015	5693	3	3	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0016	5692	2	0	0	2	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0017	5691	2	1	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0018	5691	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0019	5693	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0020	5691	2	0	0	2	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0021	5672	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0022	5691	2	0	0	0	0	2	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0023	5693	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0024	5690	2	1	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0025	5693	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0026	5691	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0027	5693	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0028	5693	2	0	0	2	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0029	5693	2	0	0	0	0	2	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0030	5693	2	0	0	0	0	2	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0031	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0032	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0033	5693	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0034	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0035	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0036	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0037	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0038	5693	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0039	5693	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0040	5693	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0041	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0042	5692	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0043	5692	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0044	5692	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887