JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST3GAL1_chr8_133449848_133576887	0/0	t0045	5693	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0046	5691	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0047	5691	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0048	5691	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0049	5691	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0050	5693	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	1/0	t0051	5693	1	0	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0052	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0053	5692	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0054	5693	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0055	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0056	5692	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0057	5694	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0058	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0059	5693	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0060	5693	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0061	5693	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0062	5691	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0063	5690	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0064	5691	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0065	5692	1	0	0	0	1	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0066	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0067	5693	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0068	5693	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0069	5693	1	0	0	0	0	1	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0070	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0071	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0072	5690	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0073	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0074	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0075	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0076	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0077	5691	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0078	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0079	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0080	5693	1	0	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0081	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0082	5690	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	t0083	5693	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL2_chr16_70370977_70444100	1/0	t0001	6868	55	5	19	23	1	6	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/1	t0002	6869	34	0	9	20	1	3	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0003	6869	13	0	0	13	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0004	6869	13	3	0	8	0	2	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0005	6869	12	0	2	4	2	4	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0006	6868	11	5	4	0	1	1	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0007	6868	9	9	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0008	6871	8	7	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0009	6869	7	0	1	4	0	2	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0010	6869	7	7	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0011	6869	6	0	1	5	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100