JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST3GAL2_chr16_70370977_70444100	0/0	t0062	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0063	6869	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0064	6870	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0065	6868	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0066	6868	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0067	6869	1	0	0	0	0	1	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0068	6868	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0069	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0070	6858	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0071	6870	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0072	6867	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0073	6869	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0074	6869	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0075	6869	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0076	6872	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0077	6869	1	0	0	0	1	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0078	6871	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0079	6870	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0080	6872	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0081	6869	1	0	0	0	0	1	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0082	6869	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0083	6870	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0084	6869	1	0	0	0	0	1	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0085	6870	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0086	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0087	6869	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0088	6867	1	0	0	0	1	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0089	6867	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0090	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0091	6870	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0092	6869	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0093	6870	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0094	6869	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0095	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0096	6869	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0097	6868	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0098	6868	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0099	6868	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0100	6870	1	0	0	1	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0101	6873	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0102	6868	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0103	6900	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0104	6869	1	0	1	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	t0105	6873	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL3_chr1_43702536_43936159	1/0	t0001	1127	104	59	6	32	2	4	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/1	t0002	1127	104	11	22	52	5	13	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0003	1127	36	3	8	19	0	6	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0004	1127	23	0	2	20	0	1	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0005	1127	2	0	1	0	1	0	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0006	1127	1	1	0	0	0	0	copy fasta	ST3GAL3	chr1	43702536	43936159