JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST3GAL3_chr1_43702536_43936159	0/0	t0007	1127	1	0	1	0	0	0	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0008	1127	1	0	0	1	0	0	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0009	1127	1	0	0	1	0	0	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL3_chr1_43702536_43936159	0/0	t0010	1127	1	0	0	1	0	0	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL4_chr11_126350686_126419638	1/1	t0001	809	314	88	69	114	16	25	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0002	809	2	0	0	2	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0003	809	1	0	0	1	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0004	809	1	0	0	1	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0005	809	1	0	0	0	0	1	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0006	809	1	1	0	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0007	809	1	0	1	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0008	809	1	1	0	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0009	809	1	0	1	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	t0010	809	1	0	1	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL5_chr2_85832120_85893990	0/0	t0001	3110	120	30	20	57	4	9	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0002	3110	78	22	20	27	4	5	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0003	3110	74	3	13	42	3	13	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0004	3110	42	0	0	37	1	4	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	1/0	t0005	3110	35	25	0	0	2	7	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0006	3110	5	5	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0007	3110	4	0	0	4	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0008	3110	2	0	0	2	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0009	3110	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0010	3110	1	0	1	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0011	3110	1	0	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0012	3110	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0013	3110	1	0	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0014	3110	1	0	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/1	t0015	3110	1	0	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0016	3110	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0017	3110	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	t0018	3110	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL6_chr3_98758340_98800852	0/0	t0001	2203	162	14	37	83	4	24	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/1	t0002	2207	98	27	19	35	6	10	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0003	2203	56	19	7	15	4	11	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	1/0	t0004	2203	16	15	0	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0005	2207	14	5	6	0	2	1	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0006	2207	9	0	0	9	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0007	2203	6	0	0	6	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0008	2207	5	4	1	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0009	2207	1	1	0	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0010	2203	1	0	0	1	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0011	2203	1	1	0	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0012	2203	1	0	0	1	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0013	2203	1	0	0	1	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	t0014	2203	1	0	0	1	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST6GAL1_chr3_186925526_187083553	1/1	t0001	3384	61	2	18	23	3	13	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0002	3384	33	0	6	13	1	13	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0003	3385	29	8	11	3	4	3	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0004	3385	25	7	4	9	3	2	copy fasta	ST6GAL1	chr3	186925526	187083553