Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACP6_chr1_147637230_147675524	0/0	t0043	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	1/0	t0044	5670	1	0	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0045	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0046	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0047	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0048	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0049	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0050	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0051	5671	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0052	5670	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0053	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0054	5673	1	0	1	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0055	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0056	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0057	5671	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0058	5672	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0059	5671	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0060	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0061	5673	1	0	0	0	0	1	copy fasta	ACP6	chr1	147637230	147675524
ACP7_chr19_39079368_39116493	0/1	t0001	1587	93	15	22	36	8	11	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0002	1590	53	0	14	29	0	10	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0003	1587	52	12	14	20	2	4	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0004	1587	47	1	13	27	1	5	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0005	1587	38	4	8	23	1	2	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	1/0	t0006	1587	32	12	4	15	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0007	1590	9	0	1	4	0	4	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0008	1587	9	8	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0009	1587	9	9	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0010	1587	8	8	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0011	1590	7	0	0	7	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0012	1587	4	0	0	1	3	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0013	1587	4	3	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0014	1590	4	0	0	3	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0015	1590	4	0	2	1	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0016	1587	3	3	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0017	1590	3	0	2	0	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0018	1590	3	3	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0019	1587	3	0	0	3	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0020	1587	2	0	2	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0021	1590	2	0	0	2	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0022	1587	2	0	0	2	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0023	1590	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0024	1590	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0025	1562	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0026	1590	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0027	1590	1	0	0	0	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0028	1590	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0029	1590	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0030	1587	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	t0031	1587	1	0	0	0	1	0	copy fasta	ACP7	chr19	39079368	39116493