Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMERB1_chr16_15429588_15593259	0/0	t0016	1496	1	1	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0017	1485	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0018	1496	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0019	1496	1	1	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0020	1497	1	0	0	0	1	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0021	1496	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0022	1496	1	1	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	t0023	1498	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMF_chr15_40082890_40113879	0/1	t0001	4138	122	28	16	70	2	5	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0002	4138	80	15	18	29	5	13	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0003	4138	33	4	1	21	0	7	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0004	4138	29	0	8	17	3	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0005	4138	23	5	8	9	1	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0006	4138	11	0	1	6	0	4	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0007	4138	10	8	1	0	1	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	1/0	t0008	4138	9	7	1	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0009	4138	8	0	0	8	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0010	4138	8	0	4	0	2	2	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0011	4138	6	0	0	6	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0012	4138	6	0	4	1	0	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0013	4138	6	5	1	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0014	4138	4	2	0	2	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0015	4138	4	0	0	4	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0016	4138	3	0	0	3	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0017	4138	3	0	0	0	2	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0018	4138	3	3	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0019	4140	3	0	3	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0020	4138	3	0	0	1	0	2	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0021	4138	2	2	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0022	4138	2	0	0	2	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0023	4138	2	2	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0024	4138	2	0	0	0	0	2	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0025	4138	2	0	0	2	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0026	4138	2	0	1	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0027	4138	2	2	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0028	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0029	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0030	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0031	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0032	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0033	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0034	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0035	4138	1	0	0	0	0	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0036	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0037	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0038	4138	1	0	0	0	1	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0039	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0040	4138	1	0	0	0	0	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0041	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0042	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879