JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ST6GAL1_chr3_186925526_187083553	0/0	t0005	3387	20	2	9	8	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0006	3385	14	0	0	14	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0007	3384	10	0	3	7	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0008	3389	10	8	2	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0009	3387	10	4	0	3	3	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0010	3387	9	0	0	9	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0011	3387	9	2	0	4	3	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0012	3387	9	0	1	7	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0013	3385	8	0	0	8	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0014	3385	6	0	1	5	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0015	3385	6	1	0	5	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0016	3383	5	1	4	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0017	3384	4	3	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0018	3386	4	4	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0019	3385	4	3	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0020	3390	4	1	3	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0021	3386	3	3	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0022	3390	3	1	2	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0023	3385	3	3	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0024	3385	3	0	0	3	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0025	3384	3	3	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0026	3388	3	3	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0027	3389	3	3	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0028	3387	2	0	0	2	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0029	3385	2	0	0	2	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0030	3388	2	2	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0031	3387	2	1	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0032	3388	2	1	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0033	3385	2	0	2	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0034	3387	2	0	0	2	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0035	3385	2	2	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0036	3387	2	0	0	2	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0037	3388	2	2	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0038	3387	2	2	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0039	3385	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0040	3384	1	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0041	3386	1	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0042	3384	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0043	3385	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0044	3384	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0045	3387	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0046	3390	1	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0047	3385	1	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0048	3387	1	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0049	3385	1	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0050	3388	1	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0051	3384	1	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0052	3384	1	0	0	0	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0053	3384	1	0	0	0	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0054	3388	1	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553