JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST6GAL1_chr3_186925526_187083553	0/0	t0055	3384	1	0	0	0	0	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0056	3387	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0057	3387	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0058	3386	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0059	3386	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0060	3385	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0061	3386	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0062	3387	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0063	3388	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0064	3384	1	0	0	0	0	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0065	3384	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0066	3387	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0067	3386	1	0	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0068	3384	1	0	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0069	3384	1	0	0	0	0	1	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0070	3385	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0071	3386	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0072	3385	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0073	3386	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0074	3385	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0075	3387	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0076	3385	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	t0077	3384	1	0	0	0	1	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL2_chr2_106796600_106891167	0/0	t0001	5206	38	6	8	20	1	3	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0002	5211	34	1	8	19	0	6	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0003	5210	19	3	8	2	4	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0004	5210	17	2	0	14	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0005	5206	12	0	0	12	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0006	5210	12	4	3	4	1	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0007	5211	11	0	0	10	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/1	t0008	5211	10	4	1	2	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0009	5209	9	7	0	1	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0010	5214	8	1	2	5	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0011	5213	8	6	0	2	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0012	5209	8	6	0	0	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0013	5208	8	0	3	5	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0014	5207	7	0	1	2	1	3	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0015	5208	7	0	1	4	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0016	5206	6	0	2	1	0	3	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0017	5212	6	0	3	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0018	5211	6	0	3	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0019	5209	5	0	2	0	1	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0020	5207	5	1	0	3	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0021	5210	5	0	3	0	1	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0022	5206	5	3	0	0	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0023	5211	5	5	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0024	5208	4	0	0	4	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0025	5203	4	3	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0026	5209	4	3	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0027	5206	4	1	1	0	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167