JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST6GAL2_chr2_106796600_106891167	0/0	t0028	5203	3	0	0	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0029	5209	3	0	0	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0030	5202	3	0	0	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0031	5208	3	0	0	2	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0032	5214	3	0	0	3	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0033	5210	3	0	2	0	1	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0034	5207	3	1	1	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0035	5210	2	1	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0036	5205	2	0	0	2	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0037	5208	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0038	5203	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0039	5207	2	0	0	2	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0040	5217	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0041	5214	2	0	0	2	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0042	5209	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0043	5211	2	0	1	0	1	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0044	5214	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0045	5210	2	0	0	0	2	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0046	5214	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0047	5207	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0048	5212	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0049	5204	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0050	5210	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0051	5211	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0052	5214	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0053	5214	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0054	5205	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0055	5208	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	1/0	t0056	5211	1	0	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0057	5203	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0058	5206	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0059	5210	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0060	5212	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0061	5203	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0062	5209	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0063	5210	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0064	5206	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0065	5209	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0066	5213	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0067	5212	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0068	5213	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0069	5209	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0070	5212	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0071	5206	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0072	5211	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0073	5207	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0074	5210	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0075	5205	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0076	5207	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0077	5210	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167