JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST6GAL2_chr2_106796600_106891167	0/0	t0078	5213	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0079	5213	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0080	5210	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0081	5210	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0082	5211	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0083	5214	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0084	5207	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0085	5217	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0086	5213	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0087	5210	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0088	5211	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0089	5215	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0090	5193	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0091	5214	1	0	0	0	1	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0092	5212	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0093	5211	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0094	5210	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0095	5207	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0096	5210	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0097	5208	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0098	5210	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0099	5213	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0100	5210	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0101	5210	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0102	5211	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0103	5213	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0104	5212	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0105	5214	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0106	5209	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	t0107	5209	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GALNAC1_chr17_76619763_76648757	1/1	t0001	687	221	38	34	116	10	21	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0002	687	97	21	32	28	5	11	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0003	687	73	24	4	34	1	10	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0004	687	13	9	2	0	0	2	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0005	685	4	4	0	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0006	687	2	2	0	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0007	687	1	1	0	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	t0008	687	1	1	0	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC2_chr17_76560377_76590860	0/0	t0001	797	123	5	19	79	3	17	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0002	797	61	10	8	41	0	2	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/1	t0003	769	44	8	8	17	1	9	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0004	796	26	6	2	12	3	3	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0005	786	21	15	5	1	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0006	779	21	4	3	7	2	5	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0007	770	20	1	16	1	2	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0008	780	14	0	1	12	0	1	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0009	770	13	9	3	1	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0010	797	12	11	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0011	797	10	9	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0012	796	9	3	1	3	0	2	copy fasta	ST6GALNAC2	chr17	76560377	76590860