JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST6GALNAC2_chr17_76560377_76590860	0/0	t0013	797	7	1	2	2	1	1	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0014	779	5	1	0	4	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0015	769	4	0	1	2	1	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0016	796	4	0	0	1	0	3	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0017	779	4	4	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0018	796	3	0	1	0	1	1	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0019	797	3	0	2	0	0	1	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0020	787	3	3	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	1/0	t0021	780	3	1	0	0	0	1	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0022	787	2	0	0	2	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0023	797	2	0	2	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0024	797	2	2	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0025	780	1	0	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0026	797	1	0	0	1	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0027	797	1	0	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0028	779	1	0	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0029	779	1	0	0	1	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0030	769	1	0	0	1	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0031	770	1	1	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0032	779	1	1	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0033	797	1	0	1	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC2_chr17_76560377_76590860	0/0	t0034	770	1	1	0	0	0	0	copy fasta	ST6GALNAC2	chr17	76560377	76590860
ST6GALNAC3_chr1_76069746_76639603	0/0	t0001	5919	29	16	6	1	1	5	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0002	5918	17	15	2	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0003	5917	9	8	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0004	5917	6	2	1	0	0	3	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0005	5918	5	5	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0006	5917	5	3	2	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0007	5917	4	4	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0008	5919	3	0	1	0	1	1	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0009	5919	2	2	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0010	5919	2	2	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0011	5919	2	0	2	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0012	5918	1	0	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0013	5919	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0014	5919	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0015	5918	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0016	5917	1	0	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0017	5919	1	0	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0018	5919	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0019	5917	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0020	5919	1	0	0	1	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0021	5919	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0022	5918	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0023	5918	1	0	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0024	5917	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0025	5918	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0026	5917	1	0	1	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0027	5917	1	0	0	0	0	1	copy fasta	ST6GALNAC3	chr1	76069746	76639603
ST6GALNAC3_chr1_76069746_76639603	0/0	t0028	5917	1	1	0	0	0	0	copy fasta	ST6GALNAC3	chr1	76069746	76639603