JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST6GALNAC6_chr9_127880321_127904603	0/0	t0005	1409	4	4	0	0	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	1/0	t0006	1409	1	0	0	0	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	t0007	1409	1	0	1	0	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	t0008	1409	1	0	0	0	0	1	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	t0009	1409	1	0	0	0	0	1	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	t0010	1409	1	0	0	0	0	1	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	t0011	1409	1	0	0	1	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST7L_chr1_112518514_112624141	1/1	t0001	2528	137	36	21	61	7	10	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0002	2528	95	5	19	62	3	6	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0003	2528	75	14	12	39	5	5	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0004	2522	12	0	12	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0005	2528	9	9	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0006	2528	7	7	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0007	2528	7	5	2	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0008	2528	4	4	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0009	2528	2	1	1	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0010	2528	2	2	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0011	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0012	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0013	2528	1	0	1	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0014	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0015	2528	1	0	0	0	0	1	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0016	2528	1	0	0	0	1	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0017	2528	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0018	2528	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0019	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0020	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0021	2528	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0022	2528	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0023	2528	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	t0024	2528	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7_chr7_116948501_117235176	1/1	t0001	360	188	70	36	58	10	12	copy fasta	ST7	chr7	116948501	117235176
ST8SIA1_chr12_22188391_22339707	0/0	t0001	8641	10	0	0	9	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0002	8640	7	0	0	5	0	2	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0003	8639	7	1	2	1	0	3	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0004	8642	5	0	0	5	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0005	8638	5	1	3	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0006	8623	4	0	2	2	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0007	8640	4	0	0	3	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0008	8639	4	0	1	0	2	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0009	8635	4	0	3	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0010	8654	4	0	4	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	1/0	t0011	8637	4	1	1	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0012	8637	3	1	0	2	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0013	8641	3	0	0	3	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0014	8644	3	0	2	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0015	8636	3	1	0	2	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0016	8635	3	0	1	2	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0017	8644	3	3	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0018	8644	2	0	0	2	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707