JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA1_chr12_22188391_22339707	0/0	t0069	8639	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0070	8643	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0071	8637	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0072	8646	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0073	8639	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0074	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0075	8641	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0076	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0077	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0078	8643	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0079	8645	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0080	8645	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0081	8625	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0082	8641	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0083	8646	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0084	8641	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0085	8632	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0086	8649	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0087	8638	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0088	8640	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0089	8641	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0090	8636	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0091	8622	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0092	8622	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0093	8622	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0094	8626	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0095	8622	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0096	8629	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0097	8638	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0098	8647	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0099	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0100	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0101	8641	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0102	8643	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0103	8644	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0104	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0105	8638	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0106	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0107	8623	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0108	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0109	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0110	8646	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0111	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0112	8654	1	0	0	0	1	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0113	8651	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0114	8639	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0115	8636	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0116	8636	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0117	8638	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0118	8638	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707