JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA1_chr12_22188391_22339707	0/0	t0119	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0120	8643	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0121	8641	1	0	0	0	1	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0122	8639	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0123	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0124	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0125	8635	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0126	8625	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0127	8626	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0128	8621	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0129	8631	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0130	8637	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0131	8632	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/1	t0132	8644	1	0	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0133	8650	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0134	8641	1	0	0	0	1	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0135	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0136	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0137	8641	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0138	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0139	8642	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0140	8644	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0141	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0142	8635	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0143	8639	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0144	8638	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0145	8641	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0146	8645	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0147	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0148	8639	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0149	8633	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0150	8639	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0151	8633	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0152	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0153	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0154	8640	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0155	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0156	8644	1	0	0	0	1	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0157	8647	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0158	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0159	8635	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0160	8641	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0161	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0162	8637	1	0	0	0	0	1	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0163	8643	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0164	8634	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0165	8634	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0166	8640	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0167	8620	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0168	8625	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707