Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMF_chr15_40082890_40113879	0/0	t0043	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0044	4138	1	0	0	0	0	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0045	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0046	4138	1	0	1	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0047	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0048	4138	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0049	4138	1	0	0	0	1	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0050	4138	1	0	0	0	0	1	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0051	4138	1	0	1	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0052	4138	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	t0053	4138	1	0	1	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMI1_chr10_22316099_22336484	0/1	t0001	2560	176	44	42	62	5	22	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0002	2560	22	21	0	0	0	1	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0003	2560	13	11	2	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	1/0	t0004	2560	8	0	7	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0005	2560	5	5	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0006	2560	3	0	2	0	1	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0007	2560	3	1	1	0	0	1	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0008	2560	2	1	1	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0009	2560	2	1	1	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0010	2560	2	2	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0011	2560	1	0	0	0	0	1	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0012	2560	1	0	1	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0013	2560	1	1	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0014	2542	1	0	0	1	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0015	2560	1	0	0	0	0	1	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0016	2560	1	1	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0017	2560	1	1	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0018	2560	1	0	1	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0019	2560	1	1	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	t0020	2560	1	0	0	1	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMP10_chr2_68855909_68876397	0/0	t0001	4762	185	28	31	100	9	17	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	1/1	t0002	4762	52	1	9	29	3	8	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0003	4762	36	4	3	21	1	7	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0004	4762	34	17	7	5	1	4	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0005	4761	18	0	2	11	0	5	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0006	4761	16	1	9	6	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0007	4758	12	12	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0008	4762	6	5	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0009	4762	5	0	0	5	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0010	4762	5	5	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0011	4762	5	4	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0012	4762	4	0	0	4	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0013	4762	4	4	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0014	4758	3	3	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0015	4762	3	0	2	0	1	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0016	4762	3	0	3	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0017	4762	2	1	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0018	4762	2	0	2	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0019	4762	2	2	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397