JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA1_chr12_22188391_22339707	0/0	t0169	8632	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0170	8634	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0171	8634	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0172	8635	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0173	8649	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0174	8636	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0175	8633	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0176	8635	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0177	8637	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0178	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0179	8632	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0180	8635	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0181	8638	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0182	8645	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0183	8638	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0184	8638	1	0	0	0	1	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0185	8638	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0186	8639	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0187	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0188	8640	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0189	8650	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0190	8639	1	0	0	1	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0191	8620	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0192	8634	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0193	8642	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0194	8636	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0195	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	t0196	8639	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA2_chr15_92388881_92473728	0/1	t0001	4528	55	1	13	24	4	12	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0002	4528	34	0	6	26	0	2	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0003	4527	32	0	6	25	0	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0004	4528	26	2	10	2	4	8	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0005	4528	19	6	3	6	3	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0006	4527	19	0	6	6	3	4	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0007	4528	12	2	6	3	0	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	1/0	t0008	4528	12	0	2	7	0	2	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0009	4528	11	0	0	11	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0010	4528	11	11	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0011	4528	9	6	0	0	0	3	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0012	4528	9	0	3	6	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0013	4527	8	0	1	6	0	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0014	4528	7	7	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0015	4528	7	0	0	7	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0016	4528	6	4	2	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0017	4528	5	5	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0018	4528	5	4	1	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0019	4528	5	1	0	3	0	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0020	4528	3	3	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0021	4528	3	1	1	0	1	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	t0022	4528	3	3	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728