JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA3_chr18_57347557_57373931	0/0	t0046	8939	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0047	8939	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0048	8938	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0049	8936	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0050	8935	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0051	8935	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0052	8935	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0053	8933	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0054	8932	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0055	8931	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0056	8945	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0057	8945	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0058	8955	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0059	8955	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0060	8948	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0061	8953	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0062	8953	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0063	8951	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0064	8951	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0065	8951	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0066	8951	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0067	8951	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0068	8949	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0069	8949	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0070	8949	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0071	8949	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0072	8949	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0073	8949	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0074	8949	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0075	8949	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0076	8947	1	0	0	0	1	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0077	8947	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/1	t0078	8947	1	0	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0079	8947	1	0	0	0	1	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0080	8947	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0081	8947	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0082	8947	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0083	8947	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0084	8946	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0085	8945	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0086	8945	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0087	8945	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	1/0	t0088	8945	1	0	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0089	8943	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0090	8943	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0091	8940	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0092	8935	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0093	8939	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0094	8937	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0095	8936	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931