JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA3_chr18_57347557_57373931	0/0	t0096	8936	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0097	8936	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0098	8935	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0099	8930	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0100	8934	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0101	8934	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0102	8934	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0103	8934	1	0	0	0	0	1	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0104	8933	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0105	8932	1	0	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0106	8932	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0107	8932	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0108	8937	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	t0109	8933	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA4_chr5_100801933_100908282	0/0	t0001	5238	57	3	16	30	4	4	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0002	5244	54	11	10	26	3	4	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0003	5244	41	3	11	21	1	5	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0004	5242	30	1	1	27	0	1	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	1/0	t0005	5242	24	13	8	2	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0006	5237	7	7	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0007	5242	5	5	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0008	5237	4	4	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0009	5244	4	3	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0010	5241	3	2	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0011	5241	3	0	3	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0012	5240	3	2	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0013	5241	3	0	1	0	2	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0014	5244	3	0	1	0	1	1	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0015	5246	3	1	0	2	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0016	5244	3	3	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0017	5245	3	3	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0018	5244	3	0	0	3	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0019	5239	2	2	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0020	5238	2	0	0	2	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0021	5239	2	0	1	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0022	5237	2	2	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0023	5243	2	1	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0024	5244	2	1	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0025	5243	2	0	0	2	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/1	t0026	5244	2	0	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0027	5245	2	2	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0028	5237	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0029	5237	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0030	5238	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0031	5237	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0032	5239	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0033	5245	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0034	5241	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0035	5237	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0036	5243	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282