JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA4_chr5_100801933_100908282	0/0	t0037	5244	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0038	5245	1	0	0	0	1	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0039	5244	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0040	5243	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0041	5248	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0042	5245	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0043	5243	1	0	0	0	0	1	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0044	5241	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0045	5245	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0046	5242	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0047	5244	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0048	5248	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0049	5246	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0050	5244	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0051	5244	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0052	5240	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0053	5246	1	1	0	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	t0054	5243	1	0	1	0	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA5_chr18_46662821_46762053	0/0	t0001	12787	42	4	11	23	0	4	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0002	12786	32	0	6	20	2	4	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0003	12786	21	3	4	3	5	6	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0004	12787	21	4	5	10	1	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/1	t0005	12788	20	2	9	6	1	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0006	12787	19	2	2	12	1	2	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0007	12786	9	3	5	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0008	12786	7	0	0	5	1	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0009	12787	7	0	0	7	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	1/0	t0010	12767	6	0	0	5	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0011	12788	5	5	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0012	12787	5	0	0	5	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0013	12788	5	1	0	2	0	2	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0014	12786	4	0	4	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0015	12787	4	0	0	4	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0016	12787	4	4	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0017	12787	4	4	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0018	12789	4	0	0	0	0	4	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0019	12787	4	4	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0020	12786	3	1	0	2	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0021	12787	3	0	3	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0022	12789	3	2	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0023	12767	3	0	0	3	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0024	12787	2	2	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0025	12787	2	2	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0026	12788	2	2	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0027	12787	2	2	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0028	12789	2	0	0	2	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0029	12786	2	0	0	0	0	2	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0030	12786	2	1	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0031	12787	2	0	0	2	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0032	12788	2	0	0	0	0	2	copy fasta	ST8SIA5	chr18	46662821	46762053