JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA5_chr18_46662821_46762053	0/0	t0083	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0084	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0085	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0086	12787	1	0	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0087	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0088	12787	1	0	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0089	12787	1	0	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0090	12788	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0091	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0092	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0093	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0094	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0095	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0096	12788	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0097	12787	1	0	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0098	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0099	12786	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0100	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0101	12788	1	0	0	0	1	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0102	12786	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0103	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0104	12786	1	0	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0105	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0106	12785	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0107	12786	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0108	12788	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0109	12789	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0110	12787	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0111	12786	1	0	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0112	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0113	12786	1	0	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0114	12789	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0115	12788	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0116	12788	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0117	12788	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0118	12786	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0119	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0120	12786	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0121	12786	1	0	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0122	12785	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0123	12785	1	1	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0124	12786	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0125	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0126	12787	1	0	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0127	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	t0128	12787	1	0	0	1	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA6_chr10_17310421_17459595	0/0	t0001	5798	75	16	13	31	3	12	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	1/1	t0002	5798	45	3	16	10	3	11	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0003	5801	41	15	13	2	6	5	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0004	5798	39	3	6	26	0	4	copy fasta	ST8SIA6	chr10	17310421	17459595