JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ST8SIA6_chr10_17310421_17459595	0/0	t0005	5800	27	4	0	23	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0006	5801	8	8	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0007	5800	7	7	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0008	5798	4	0	4	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0009	5801	3	0	2	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0010	5801	3	0	0	0	0	3	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0011	5801	3	3	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0012	5801	3	3	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0013	5801	2	2	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0014	5800	2	2	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0015	5801	2	1	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0016	5801	2	2	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0017	5801	2	2	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0018	5801	2	1	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0019	5798	2	1	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0020	5798	2	0	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0021	5798	2	0	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0022	5798	2	0	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0023	5798	2	0	0	2	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0024	5801	1	0	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0025	6145	1	1	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0026	5801	1	1	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0027	5800	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0028	5800	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0029	5800	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0030	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0031	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0032	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0033	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0034	5798	1	1	0	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0035	5798	1	0	0	0	0	1	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0036	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0037	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0038	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	t0039	5798	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
STAB1_chr3_52490338_52529495	1/1	t0001	216	366	89	72	150	16	37	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	t0002	216	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	t0003	216	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB2_chr12_103582273_103771719	1/1	t0001	588	214	45	56	62	14	35	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0002	592	27	25	2	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0003	588	6	6	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0004	588	4	4	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0005	592	2	2	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0006	588	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0007	588	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	t0008	588	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAC2_chr17_39205541_39230945	1/0	t0001	2195	146	3	35	76	7	24	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0002	2197	71	1	16	34	5	15	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0003	2197	23	21	2	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0004	2196	20	11	3	2	4	0	copy fasta	STAC2	chr17	39205541	39230945