JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAC2_chr17_39205541_39230945	0/0	t0005	2196	18	14	4	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0006	2192	12	1	2	8	1	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0007	2196	10	0	1	7	0	2	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0008	2197	6	6	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0009	2196	6	0	0	6	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/1	t0010	2195	5	0	3	0	1	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0011	2197	4	0	1	3	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0012	2198	4	4	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0013	2198	4	4	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0014	2195	3	0	0	3	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0015	2196	3	2	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0016	2196	3	3	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0017	2198	2	2	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0018	2197	2	0	0	2	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0019	2197	2	2	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0020	2197	2	2	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0021	2192	2	0	2	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0022	2196	2	2	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0023	2197	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0024	2196	1	0	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0025	2196	1	0	0	1	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0026	2196	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0027	2198	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0028	2196	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0029	2197	1	0	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0030	2193	1	0	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0031	2196	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0032	2197	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0033	2196	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0034	2197	1	0	0	0	0	1	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0035	2196	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0036	2197	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0037	2195	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0038	2195	1	0	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0039	2197	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	t0040	2197	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC3_chr12_57238458_57256187	1/1	t0001	550	329	78	58	150	12	29	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0002	550	91	17	14	41	6	13	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0003	550	4	0	0	4	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0004	550	2	0	0	0	0	2	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0005	550	1	0	0	1	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0006	550	1	1	0	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0007	550	1	0	0	1	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	t0008	550	1	0	0	1	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC_chr3_36375504_36553007	1/0	t0001	1859	185	58	29	71	5	21	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0002	1859	52	9	4	31	1	7	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0003	1859	40	3	7	21	2	7	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/1	t0004	1858	11	6	3	0	0	1	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0005	1859	7	1	1	5	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	t0006	1859	4	3	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007