Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP10_chr2_68855909_68876397	0/0	t0020	4758	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0021	4762	1	0	0	0	0	1	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0022	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0023	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0024	4762	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0025	4762	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0026	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0027	4762	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0028	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0029	4762	1	0	0	0	1	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0030	4762	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0031	4750	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0032	4762	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0033	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0034	4762	1	0	0	0	0	1	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0035	4761	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0036	4762	1	0	0	0	0	1	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0037	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	t0038	4762	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP15_chrX_50905735_50921641	1/1	t0001	84	245	56	48	104	10	25	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	t0002	84	42	15	9	10	3	5	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	t0003	84	6	6	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	t0004	84	1	1	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP1_chr8_22160372_22206482	1/1	t0001	314	405	94	60	188	15	46	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0002	314	8	1	6	0	1	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0003	314	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0004	314	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0005	314	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0006	314	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	t0007	314	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22217326	1/1	t0001	633	357	68	57	176	14	40	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0002	633	29	14	7	1	1	6	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0003	633	7	6	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0004	633	4	4	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0005	633	3	2	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0006	633	2	2	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0007	633	2	0	1	0	1	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0008	633	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0009	633	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0010	633	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	t0011	633	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP2K_chr4_78771350_78921365	0/0	t0001	4527	70	18	4	37	3	8	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0002	4519	42	0	1	37	1	3	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	1/1	t0003	4527	21	5	3	7	0	4	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0004	4519	10	9	1	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0005	4527	8	8	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0006	4527	7	6	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0007	4519	7	0	0	7	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0008	4527	6	6	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0009	4527	6	5	1	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365