JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAM2_chr2_152111801_152180763	0/0	t0002	3894	41	1	0	29	0	11	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/1	t0003	3900	34	2	4	16	1	10	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0004	3898	27	3	10	12	0	2	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0005	3893	21	0	1	18	0	2	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0006	3894	21	5	7	5	3	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0007	3895	14	14	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0008	3895	13	1	3	7	1	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0009	3895	10	9	0	0	0	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0010	3895	7	0	0	7	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0011	3894	7	6	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0012	3897	7	6	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0013	3895	6	0	4	0	0	2	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0014	3898	6	5	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0015	3896	6	3	0	1	1	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0016	3895	5	5	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0017	3896	5	0	0	5	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0018	3898	4	4	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0019	3901	4	4	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0020	3903	4	3	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0021	3901	4	0	0	3	0	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0022	3897	4	0	3	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0023	3897	3	0	0	3	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0024	3902	3	0	0	3	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0025	3896	2	0	0	2	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0026	3895	2	0	0	0	0	2	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0027	3899	2	0	2	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0028	3895	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0029	3894	1	0	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0030	3893	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0031	3893	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0032	3894	1	0	0	0	1	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0033	3894	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0034	3897	1	0	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0035	3894	1	0	0	0	0	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0036	3894	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0037	3898	1	0	0	0	0	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0038	3895	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0039	3898	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0040	3895	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0041	3895	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0042	3895	1	0	0	0	1	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0043	3895	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0044	3899	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0045	3899	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0046	3896	1	0	0	0	1	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0047	3896	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0048	3898	1	0	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0049	3900	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0050	3894	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0051	3895	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763