JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAM2_chr2_152111801_152180763	0/0	t0052	3897	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0053	3897	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0054	3899	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0055	3896	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0056	3898	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0057	3896	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0058	3896	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0059	3898	1	0	1	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0060	3894	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0061	3897	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0062	3896	1	0	0	0	0	1	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	t0063	3894	1	0	0	1	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAMBPL1_chr10_88875245_88928487	0/0	t0001	711	262	57	44	129	6	26	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	1/1	t0002	711	93	20	17	35	11	8	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0003	711	12	3	1	5	1	2	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0004	711	9	0	0	7	0	2	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0005	711	8	7	1	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0006	711	1	1	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0007	711	1	1	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0008	711	1	0	1	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	t0009	711	1	1	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBP_chr2_73823961_73872168	1/1	t0001	5472	131	20	23	66	8	12	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0002	5471	72	12	2	53	1	4	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0003	5471	24	9	3	12	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0004	5471	19	0	13	2	1	3	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0005	5471	14	10	4	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0006	5471	11	11	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0007	5472	9	0	1	7	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0008	5472	8	6	2	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0009	5471	7	7	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0010	5471	6	0	1	4	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0011	5472	5	0	1	0	3	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0012	5471	5	0	0	4	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0013	5471	5	0	1	0	1	3	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0014	5471	4	1	3	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0015	5472	4	1	1	0	0	2	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0016	5471	4	0	3	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0017	5473	3	0	3	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0018	5471	3	3	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0019	5471	2	1	1	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0020	5472	2	0	2	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0021	5472	2	0	2	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0022	5471	2	2	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0023	5472	2	0	2	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0024	5473	1	0	1	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0025	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0026	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0027	5472	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0028	5471	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0029	5472	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168