JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAMBP_chr2_73823961_73872168	0/0	t0030	5472	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0031	5472	1	0	0	0	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0032	5472	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0033	5472	1	0	0	0	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0034	5472	1	0	1	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0035	5472	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0036	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0037	5472	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0038	5471	1	0	0	0	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0039	5472	1	0	0	0	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0040	5471	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0041	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0042	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0043	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0044	5472	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0045	5471	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0046	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	t0047	5471	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAM_chr10_17639151_17721824	0/0	t0001	2234	127	23	13	77	3	11	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	1/0	t0002	2234	121	11	31	62	5	11	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0003	2236	75	9	10	45	3	8	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0004	2236	34	24	5	1	2	2	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/1	t0005	2237	20	1	12	4	2	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0006	2236	5	5	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0007	2234	5	0	1	0	1	3	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0008	2235	3	0	1	2	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0009	2237	3	1	0	2	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0010	2234	3	2	1	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0011	2236	3	0	0	3	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0012	2236	2	2	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0013	2236	2	0	0	2	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0014	2234	2	0	2	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0015	2234	2	2	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0016	2234	2	2	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0017	2235	2	2	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0018	2236	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0019	2234	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0020	2236	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0021	2236	1	0	1	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0022	2236	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0023	2234	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0024	2234	1	0	1	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0025	2234	1	0	1	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0026	2234	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0027	2234	1	0	0	0	0	1	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0028	2236	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0029	2236	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0030	2234	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0031	2234	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	t0032	2234	1	0	1	0	0	0	copy fasta	STAM	chr10	17639151	17721824