JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAP1_chr4_67553727_67612337	0/0	t0001	1064	226	45	60	87	11	23	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/1	t0002	1064	109	12	12	70	3	11	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	1/0	t0003	1064	30	18	5	4	0	2	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0004	1064	5	4	1	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0005	1064	3	0	0	3	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0006	1064	3	3	0	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0007	1064	2	2	0	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0008	1064	2	0	0	2	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0009	1064	1	1	0	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	t0010	1064	1	1	0	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP2_chr19_4319043_4343827	1/1	t0001	165	384	93	78	154	14	43	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	t0002	165	3	3	0	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	t0003	165	1	0	0	0	0	1	copy fasta	STAP2	chr19	4319043	4343827
STARD10_chr11_72749729_72799047	0/1	t0001	1455	138	22	30	64	5	16	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0002	1455	93	17	24	38	4	10	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0003	1455	61	5	8	40	2	6	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0004	1455	28	1	9	9	3	6	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0005	1461	19	19	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0006	1462	11	11	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0007	1455	6	6	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0008	1461	5	5	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0009	1455	3	3	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0010	1462	3	3	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0011	1455	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0012	1461	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0013	1455	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0014	1461	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0015	1461	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0016	1455	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0017	1455	1	0	0	1	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	t0018	1455	1	0	1	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	1/0	t0019	1455	1	0	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD13_chr13_33098137_33290755	1/0	t0001	2574	94	16	16	52	1	8	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/1	t0002	2574	86	18	21	25	5	16	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0003	2574	65	6	16	29	1	13	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0004	2574	14	11	3	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0005	2574	7	7	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0006	2572	5	4	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0007	2574	4	4	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0008	2574	3	3	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0009	2574	2	2	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0010	2574	2	2	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0011	2574	2	2	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0012	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0013	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0014	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0015	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0016	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0017	2574	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0018	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755