JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STARD13_chr13_33098137_33290755	0/0	t0019	2574	1	0	0	0	0	1	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0020	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0021	2574	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0022	2574	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0023	2574	1	0	0	0	1	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0024	2574	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0025	2574	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0026	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0027	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0028	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	t0029	2574	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD3NL_chr7_38173245_38235669	1/0	t0001	999	128	43	16	48	5	15	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0002	999	89	19	20	39	3	8	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/1	t0003	999	76	14	10	37	4	10	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0004	999	72	5	15	44	1	7	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0005	999	15	2	10	0	1	2	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0006	999	11	0	0	11	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0007	999	4	0	0	4	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0008	999	3	3	0	0	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0009	999	2	2	0	0	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0010	999	2	0	0	2	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0011	999	1	0	0	1	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	t0012	999	1	0	1	0	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3_chr17_39632144_39669201	1/1	t0001	1433	262	48	50	116	14	32	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0002	1432	11	5	2	3	1	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0003	1432	11	8	2	0	1	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0004	1431	6	6	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0005	1433	5	5	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0006	1433	5	5	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0007	1433	3	3	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0008	1433	3	3	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0009	1433	2	0	0	2	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0010	1433	1	0	1	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0011	1433	1	0	0	0	0	1	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0012	1419	1	0	1	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0013	1433	1	1	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0014	1433	1	1	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0015	1433	1	0	0	0	0	1	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0016	1469	1	0	0	1	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	t0017	1430	1	1	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD4_chr5_111491033_111517535	1/1	t0001	4014	330	71	50	161	11	35	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0002	4014	49	13	12	18	1	5	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0003	4014	16	0	2	12	1	1	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0004	4014	6	0	4	0	2	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0005	4014	5	0	0	5	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0006	4014	3	1	2	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0007	4014	3	2	1	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0008	4013	3	3	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0009	4014	2	0	1	0	1	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0010	4014	2	2	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535