JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STARD4_chr5_111491033_111517535	0/0	t0011	4014	2	2	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0012	4014	1	1	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0013	4014	1	0	0	1	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0014	4014	1	0	0	0	0	1	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0015	4014	1	1	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0016	4014	1	0	0	0	0	1	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0017	4014	1	0	0	0	0	1	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0018	4014	1	1	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0019	4014	1	0	1	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0020	4014	1	0	0	1	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0021	4014	1	1	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	t0022	4014	1	0	1	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD5_chr15_81304053_81329141	0/0	t0001	4246	96	11	24	43	7	11	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	1/0	t0002	4246	78	9	8	42	0	18	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/1	t0003	4246	78	3	11	52	5	6	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0004	4246	76	19	9	44	1	3	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0005	4244	21	6	6	5	1	3	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0006	4246	17	15	2	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0007	4246	8	0	3	5	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0008	4246	6	5	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0009	4246	5	3	2	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0010	4246	5	4	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0011	4246	5	0	0	5	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0012	4246	3	3	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0013	4246	3	0	0	3	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0014	4246	3	0	0	3	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0015	4246	3	0	0	3	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0016	4246	3	0	0	3	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0017	4246	3	3	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0018	4246	2	2	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0019	4246	2	2	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0020	4246	2	0	2	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0021	4246	2	2	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0022	4246	2	0	0	2	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0023	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0024	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0025	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0026	4246	1	0	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0027	4246	1	0	0	0	0	1	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0028	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0029	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0030	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0031	4246	1	0	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0032	4246	1	0	0	0	0	1	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0033	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0034	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0035	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0036	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0037	4246	1	0	0	0	0	1	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0038	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141