JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STARD5_chr15_81304053_81329141	0/0	t0039	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0040	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0041	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0042	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0043	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0044	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0045	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0046	4246	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0047	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0048	4246	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0049	4244	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0050	4244	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	t0051	4244	1	0	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD6_chr18_54319492_54362858	1/1	t0001	356	313	75	68	126	10	32	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	t0002	353	21	8	4	2	4	3	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	t0003	356	12	7	2	0	0	3	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	t0004	353	2	0	0	0	0	2	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	t0005	356	1	1	0	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	t0006	356	1	1	0	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD7_chr2_96179859_96213827	0/0	t0001	2265	195	63	27	77	4	24	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0002	2265	36	4	8	13	0	11	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0003	2259	33	0	6	27	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0004	2265	21	0	0	21	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0005	2265	10	0	10	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0006	2265	9	1	7	0	1	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0007	2265	7	0	0	7	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0008	2264	5	0	0	5	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0009	2265	5	2	1	2	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0010	2259	4	0	0	4	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0011	2265	3	0	0	3	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	1/1	t0012	2265	3	0	0	0	1	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0013	2265	3	2	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0014	2265	3	3	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0015	2265	2	2	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0016	2264	2	0	0	2	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0017	2265	2	2	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0018	2265	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0019	2264	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0020	2265	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0021	2264	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0022	2264	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0023	2265	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0024	2265	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0025	2265	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0026	2265	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0027	2265	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0028	2265	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0029	2265	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0030	2265	1	1	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	t0031	2264	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827