JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STARD7_chr2_96179859_96213827	0/0	t0032	2265	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD8_chrX_68642666_68730836	1/1	t0001	1632	131	28	22	56	4	19	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0002	1628	8	8	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0003	1634	7	0	0	6	1	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0004	1632	7	0	2	4	0	1	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0005	1636	6	6	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0006	1634	4	3	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0007	1626	4	0	0	4	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0008	1634	3	1	2	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0009	1630	3	3	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0010	1640	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0011	1632	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0012	1630	2	1	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0013	1630	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0014	1644	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0015	1642	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0016	1638	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0017	1638	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0018	1636	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0019	1638	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0020	1630	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0021	1636	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0022	1630	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0023	1632	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0024	1634	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0025	1634	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0026	1628	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0027	1636	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0028	1632	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0029	1626	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0030	1634	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	t0031	1628	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD9_chr15_42570606_42725998	1/1	t0001	1535	82	7	20	36	3	14	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0002	1535	54	30	2	18	0	4	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0003	1535	24	12	1	9	0	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0004	1535	18	16	2	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0005	1535	17	6	4	1	3	3	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0006	1535	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0007	1535	2	0	0	0	0	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0008	1535	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0009	1535	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0010	1535	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0011	1535	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0012	1535	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0013	1535	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0014	1535	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0015	1535	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0016	1535	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	t0017	1535	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STAR_chr8_38137700_38155952	0/1	t0001	1707	185	34	47	62	15	26	copy fasta	STAR	chr8	38137700	38155952