JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAR_chr8_38137700_38155952	0/0	t0002	1707	140	31	14	81	0	14	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0003	1711	67	1	10	55	0	1	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	1/0	t0004	1708	18	8	0	7	0	2	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0005	1708	6	1	1	1	2	1	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0006	1709	6	5	1	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0007	1707	5	5	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0008	1707	2	0	1	0	1	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0009	1708	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0010	1707	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0011	1707	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0012	1708	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0013	1708	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0014	1707	1	0	1	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	t0015	1707	1	0	1	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAT1_chr2_190964149_191019171	1/1	t0001	1863	364	54	68	192	14	34	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0002	1863	19	18	1	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0003	1863	8	8	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0004	1863	4	4	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0005	1859	3	3	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0006	1863	3	2	1	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0007	1863	2	0	1	1	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0008	1863	2	2	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0009	1863	2	0	2	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0010	1863	1	0	0	1	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0011	1863	1	0	1	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0012	1863	1	0	0	0	0	1	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0013	1863	1	0	0	0	0	1	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0014	1863	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0015	1863	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	t0016	1863	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT2_chr12_56336597_56365107	1/1	t0001	1850	218	66	39	76	9	26	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0002	1851	20	13	4	3	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0003	1850	16	0	4	10	2	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0004	1851	4	0	0	4	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0005	1851	2	0	0	2	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0006	1850	1	0	0	0	1	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0007	1850	1	0	0	0	0	1	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0008	1851	1	0	0	0	0	1	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0009	1850	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0010	1850	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0011	1851	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0012	1851	1	1	0	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	t0013	1850	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT3_chr17_42308324_42393442	0/1	t0001	2609	88	2	18	57	1	9	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0002	2609	73	21	5	40	1	6	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	1/0	t0003	2609	40	13	10	7	5	4	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0004	2609	15	14	1	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0005	2610	12	11	1	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0006	2610	11	0	0	7	2	2	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0007	2610	7	1	0	6	0	0	copy fasta	STAT3	chr17	42308324	42393442