Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP2K_chr4_78771350_78921365	0/0	t0010	4524	4	1	3	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0011	4527	3	3	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0012	4519	3	3	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0013	4523	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0014	4527	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0015	4527	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0016	4527	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0017	4527	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0018	4527	1	0	1	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0019	4527	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0020	4527	1	0	0	0	0	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0021	4527	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0022	4519	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0023	4519	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0024	4519	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	t0025	4519	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2_chr20_6762686_6785246	0/0	t0001	2355	156	36	15	87	7	11	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0002	2355	149	25	13	95	3	13	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	1/0	t0003	2355	84	2	21	41	5	14	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/1	t0004	2355	33	16	13	1	2	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0005	2355	10	0	8	0	1	1	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0006	2355	8	7	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0007	2355	3	0	1	0	0	2	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0008	2353	3	3	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0009	2357	2	1	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0010	2355	2	1	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0011	2355	2	2	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0012	2355	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0013	2355	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0014	2357	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0015	2355	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0016	2355	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0017	2355	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0018	2355	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0019	2355	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0020	2355	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0021	2355	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0022	2355	1	0	0	0	0	1	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	t0023	2355	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP3_chr4_81025708_81062627	0/0	t0001	4666	170	8	38	95	6	23	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0002	4665	36	0	4	22	1	9	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0003	4666	17	4	4	4	0	5	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0004	4672	15	5	2	6	0	2	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0005	4667	15	0	2	11	1	1	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0006	4663	13	11	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0007	4664	10	9	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0008	4664	8	8	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/1	t0009	4665	6	0	1	3	0	1	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0010	4665	5	0	2	0	3	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	t0011	4664	5	2	1	2	0	0	copy fasta	BMP3	chr4	81025708	81062627