JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAT3_chr17_42308324_42393442	0/0	t0008	2608	6	2	1	1	1	1	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0009	2610	5	0	2	3	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0010	2611	4	3	0	0	0	1	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0011	2610	4	0	2	2	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0012	2608	3	0	0	3	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0013	2609	3	3	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0014	2609	2	0	1	0	1	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0015	2609	2	2	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0016	2608	2	2	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0017	2608	2	1	0	0	1	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0018	2608	2	2	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0019	2609	2	2	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0020	2619	2	2	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0021	2609	1	0	0	0	0	1	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0022	2610	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0023	2608	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0024	2619	1	0	0	0	0	1	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0025	2611	1	0	0	0	0	1	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0026	2611	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0027	2610	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0028	2610	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0029	2610	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0030	2609	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0031	2610	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0032	2610	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0033	2608	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0034	2609	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0035	2609	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0036	2595	1	0	1	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	t0037	2608	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT4_chr2_191024576_191155994	1/1	t0001	313	288	93	44	108	13	28	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	t0002	313	1	1	0	0	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	t0003	313	1	0	0	0	1	0	copy fasta	STAT4	chr2	191024576	191155994
STAT5A_chr17_42283498_42316943	1/1	t0001	1386	227	51	49	82	10	33	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0002	1382	86	6	7	59	2	12	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0003	1384	19	17	1	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0004	1382	4	4	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0005	1382	3	3	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0006	1384	3	3	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0007	1388	3	2	1	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0008	1386	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0009	1382	1	0	0	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0010	1382	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0011	1382	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0012	1382	1	0	0	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0013	1384	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0014	1386	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0015	1386	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0016	1386	1	0	1	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0017	1386	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943