JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAT5A_chr17_42283498_42316943	0/0	t0018	1386	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0019	1386	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	t0020	1386	1	0	1	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5B_chr17_42194177_42281391	1/0	t0001	2716	150	27	19	76	5	22	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0002	2714	17	14	2	0	0	1	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0003	2718	15	2	6	3	2	2	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0004	2712	10	1	3	4	1	1	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/1	t0005	2714	8	3	2	0	0	2	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0006	2712	7	1	1	5	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0007	2710	6	6	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0008	2714	6	4	2	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0009	2712	5	0	0	5	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0010	2716	5	5	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0011	2716	4	4	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0012	2716	4	1	0	1	0	2	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0013	2696	3	3	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0014	2716	3	3	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0015	2718	2	2	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0016	2716	2	0	0	0	0	2	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0017	2716	1	0	0	0	0	1	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0018	2714	1	0	0	0	0	1	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0019	2714	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0020	2714	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0021	2714	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0022	2714	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0023	2716	1	0	1	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0024	2664	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0025	2716	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0026	2716	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0027	2718	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0028	2714	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	t0029	2716	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT6_chr12_57090408_57116362	1/1	t0001	1420	80	8	10	45	6	9	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0002	1416	67	7	15	33	1	11	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0003	1420	51	22	7	15	2	5	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0004	1420	24	19	2	0	0	3	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0005	1422	17	0	5	8	0	4	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0006	1420	16	0	6	5	1	4	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0007	1416	13	2	5	6	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0008	1422	13	2	1	9	0	1	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0009	1420	12	1	5	6	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0010	1422	9	0	3	5	0	1	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0011	1416	8	4	2	2	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0012	1418	8	6	1	0	1	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0013	1416	5	5	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0014	1422	5	0	2	1	2	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0015	1416	4	0	0	4	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0016	1420	4	4	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0017	1414	3	1	2	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0018	1416	3	0	3	0	0	0	copy fasta	STAT6	chr12	57090408	57116362