JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STAT6_chr12_57090408_57116362	0/0	t0019	1416	3	0	3	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0020	1424	3	1	1	0	0	1	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0021	1410	2	2	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0022	1416	2	0	0	2	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0023	1418	2	1	1	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0024	1424	2	0	1	1	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0025	1424	2	0	2	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0026	1414	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0027	1416	1	0	0	0	0	1	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0028	1418	1	0	0	1	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0029	1418	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0030	1420	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0031	1420	1	0	0	0	1	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0032	1416	1	0	1	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0033	1422	1	0	0	1	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0034	1422	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	t0035	1420	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STATH_chr4_69990966_70007570	1/1	t0001	491	380	61	74	181	18	44	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0002	491	17	15	2	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0003	491	6	6	0	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0004	491	3	3	0	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0005	491	2	1	1	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0006	491	1	0	0	1	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	t0007	443	1	0	1	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STAU1_chr20_49108339_49193334	0/1	t0001	1916	111	51	16	31	3	9	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0002	1916	82	6	22	35	4	15	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0003	1917	75	9	12	48	1	5	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	1/0	t0004	1918	74	3	15	43	0	12	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0005	1916	10	9	1	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0006	1916	4	4	0	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0007	1918	3	0	0	3	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0008	1916	2	1	1	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0009	1917	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0010	1917	1	0	1	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0011	1917	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0012	1916	1	1	0	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	t0013	1916	1	0	0	0	0	1	copy fasta	STAU1	chr20	49108339	49193334
STAU2_chr8_73415369_73751840	1/1	t0001	1258	213	66	37	80	8	20	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0002	1258	13	5	7	1	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0003	1258	9	0	0	9	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0004	1258	2	2	0	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0005	1258	1	0	1	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0006	1258	1	1	0	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	t0007	1258	1	0	1	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STBD1_chr4_76301733_76316130	0/1	t0001	1168	338	56	74	158	12	37	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	1/0	t0002	1168	74	20	1	48	2	2	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0003	1167	10	9	1	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0004	1168	8	1	2	0	4	1	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0005	1168	5	5	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0006	1168	2	0	0	0	0	2	copy fasta	STBD1	chr4	76301733	76316130