JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STBD1_chr4_76301733_76316130	0/0	t0007	1168	2	2	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0008	1168	1	1	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0009	1168	1	0	0	1	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0010	1168	1	1	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0011	1168	1	1	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	t0012	1168	1	0	0	1	0	0	copy fasta	STBD1	chr4	76301733	76316130
STC1_chr8_23836929_23859806	0/1	t0001	3126	165	19	26	89	2	28	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	1/0	t0002	3125	112	12	20	67	7	5	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0003	3124	41	4	13	21	0	3	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0004	3127	13	3	6	3	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0005	3124	11	2	2	6	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0006	3125	11	10	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0007	3124	9	4	3	0	2	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0008	3127	7	6	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0009	3126	6	0	0	2	0	4	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0010	3126	6	1	0	4	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0011	3124	5	2	0	0	2	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0012	3125	4	0	1	3	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0013	3123	4	3	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0014	3123	4	4	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0015	3127	4	3	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0016	3127	4	4	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0017	3123	3	0	1	2	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0018	3126	2	1	0	0	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0019	3125	2	2	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0020	3126	2	2	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0021	3126	2	2	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0022	3126	2	0	0	0	2	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0023	3125	2	2	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0024	3127	1	0	0	0	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0025	3124	1	0	0	0	0	1	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0026	3125	1	0	0	0	1	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0027	3125	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0028	3127	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0029	3125	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0030	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0031	3127	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0032	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0033	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0034	3126	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0035	3125	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0036	3125	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0037	3125	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0038	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0039	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0040	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0041	3125	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0042	3145	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0043	3126	1	1	0	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0044	3126	1	0	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806