JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STC1_chr8_23836929_23859806	0/0	t0045	3103	1	0	1	0	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	t0046	3126	1	0	0	0	0	1	copy fasta	STC1	chr8	23836929	23859806
STC2_chr5_173309723_173333414	0/0	t0001	3346	361	60	72	169	17	43	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0002	3347	11	9	0	2	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0003	3346	10	0	0	10	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0004	3346	9	1	4	4	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0005	3346	6	6	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0006	3346	5	5	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0007	3346	5	0	0	5	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0008	3347	3	0	1	0	1	1	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0009	3346	3	3	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0010	3346	3	0	0	3	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0011	3347	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0012	3347	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0013	3346	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0014	3346	2	1	1	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0015	3346	2	0	2	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0016	3346	2	0	0	0	0	2	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0017	3346	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0018	3346	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0019	3346	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0020	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0021	3346	1	0	0	0	0	1	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0022	3347	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0023	3347	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0024	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0025	3346	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0026	3346	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0027	3346	1	0	1	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0028	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0029	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0030	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0031	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0032	3346	1	0	1	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0033	3346	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0034	3346	1	0	0	0	0	1	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	t0035	3346	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STEAP1B_chr7_22414444_22505188	1/0	t0001	467	190	38	37	89	3	22	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/1	t0002	467	185	41	27	91	5	20	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0003	467	3	3	0	0	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0004	467	2	0	1	0	0	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0005	467	1	0	0	1	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0006	467	1	0	1	0	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0007	467	1	0	0	1	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	t0008	467	1	0	0	0	0	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1_chr7_90149469_90169827	1/1	t0001	200	421	91	68	200	16	44	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	t0002	107	1	1	0	0	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP2_chr7_90206740_90242683	0/0	t0001	5512	89	16	7	58	0	8	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/1	t0002	5513	79	11	14	42	2	9	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0003	5512	40	13	2	22	0	3	copy fasta	STEAP2	chr7	90206740	90242683