JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STEAP2_chr7_90206740_90242683	0/0	t0004	5513	31	5	9	12	1	4	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0005	5512	21	0	2	19	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0006	5513	16	0	4	5	1	6	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0007	5512	8	8	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	1/0	t0008	5512	8	0	7	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0009	5512	5	4	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0010	5514	5	4	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0011	5512	4	0	3	0	1	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0012	5511	4	0	0	4	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0013	5512	3	0	0	3	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0014	5513	3	0	0	3	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0015	5512	3	0	1	0	1	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0016	5512	3	3	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0017	5512	3	3	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0018	5513	2	0	0	2	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0019	5513	2	0	0	2	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0020	5514	2	2	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0021	5513	2	0	0	0	0	2	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0022	5512	2	2	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0023	5512	2	0	0	2	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0024	5512	2	1	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0025	5511	2	0	1	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0026	5512	2	0	0	2	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0027	5512	2	2	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0028	5512	2	0	0	2	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0029	5511	2	1	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0030	5512	2	0	0	0	2	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0031	5502	2	2	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0032	5512	2	0	2	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0033	5512	2	0	1	0	1	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0034	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0035	5513	1	0	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0036	5513	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0037	5512	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0038	5510	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0039	5512	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0040	5511	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0041	5513	1	0	0	0	1	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0042	5513	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0043	5512	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0044	5513	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0045	5513	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0046	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0047	5512	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0048	5512	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0049	5513	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0050	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0051	5514	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0052	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0053	5511	1	0	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683