JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STEAP2_chr7_90206740_90242683	0/0	t0054	5512	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0055	5510	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0056	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0057	5512	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0058	5513	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0059	5513	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0060	5512	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0061	5512	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0062	5513	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0063	5512	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0064	5513	1	0	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0065	5513	1	0	0	0	0	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	t0066	5502	1	0	1	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP3_chr2_119218834_119270652	0/1	t0001	2761	100	4	16	62	2	15	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0002	2763	81	5	16	47	4	9	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0003	2765	16	15	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0004	2763	13	2	5	0	4	2	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0005	2763	11	6	4	0	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0006	2763	10	9	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0007	2761	8	0	1	6	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0008	2763	8	8	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0009	2763	8	1	3	2	0	2	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0010	2763	7	7	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0011	2762	6	0	0	5	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	1/0	t0012	2763	6	2	2	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0013	2761	5	0	0	5	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0014	2763	5	4	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0015	2763	5	5	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0016	2763	5	0	0	0	0	5	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0017	2763	4	4	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0018	2763	4	3	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0019	2766	4	4	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0020	2761	3	0	2	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0021	2763	3	3	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0022	2763	2	0	0	0	0	2	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0023	2763	2	2	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0024	2763	2	1	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0025	2762	2	0	1	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0026	2762	2	2	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0027	2762	2	1	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0028	2762	2	0	0	2	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0029	2763	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0030	2761	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0031	2761	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0032	2763	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0033	2765	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0034	2763	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0035	2763	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0036	2761	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0037	2763	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652