JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STEAP3_chr2_119218834_119270652	0/0	t0038	2763	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0039	2761	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0040	2761	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0041	2762	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0042	2784	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0043	2763	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0044	2762	1	0	0	0	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0045	2761	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0046	2763	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0047	2763	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0048	2763	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0049	2765	1	0	0	0	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	t0050	2763	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP4_chr7_88265892_88311894	0/0	t0001	8612	72	18	21	21	6	6	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0002	8612	63	10	15	26	0	12	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/1	t0003	8612	26	5	8	2	5	5	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0004	8614	23	8	0	13	1	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0005	8614	21	8	0	13	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0006	8614	12	0	6	5	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0007	8618	11	0	1	8	0	2	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0008	8620	9	0	2	7	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0009	8622	5	1	1	3	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0010	8614	5	0	1	4	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0011	8613	4	4	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0012	8614	3	3	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0013	8614	3	3	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0014	8612	3	2	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0015	8610	3	3	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0016	8616	3	0	1	2	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0017	8614	3	0	0	3	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0018	8612	3	0	0	3	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0019	8611	2	0	0	1	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0020	8616	2	0	0	2	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0021	8612	2	2	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0022	8600	2	1	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0023	8614	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0024	8612	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0025	8612	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0026	8610	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0027	8610	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0028	8614	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0029	8612	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0030	8614	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0031	8612	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0032	8611	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0033	8611	1	0	0	1	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0034	8613	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0035	8611	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0036	8611	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	t0037	8620	1	0	0	0	0	1	copy fasta	STEAP4	chr7	88265892	88311894